Erythropoiesis & Regenerative Hematology

Emile (E.) van den Akker, PhD

The research in my group focuses on erythropoiesis, combining fundamental biology with translational applications. Key areas include generating red blood cells (RBCs) for transfusion and regulating globin gene expression. The team develops donor-independent methods to produce RBCs and platelets in vitro, using bioreactors and gene editing to tailor therapies. Cultured RBCs can be  engineered to deliver therapeutic cargo, offering novel immunological applications. I generate the iPSC facility enabling disease modeling and production of hematopoietic cells from patient-derived lines. My group studies the three developmental waves of hematopoiesis and aims to produce fetal-like RBCs for safer fetal anemia treatments. We investigate the globin switch, crucial in beta-hemoglobinopathies, and have patented strategies to reactivate fetal hemoglobin using CRISPR. Collaborations with academic and industry partners support media development and bioreactor design. Our work bridges basic science and clinical innovation, advancing cell therapies and diagnostics.

Groupleader

Emile (E.) van den Akker, PhD

Photo group leader Emile van den Akker

Research lines

Research group of Emile van den Akker

The research in my group centers on the biology of erythropoiesis, with a dual focus on the generation of RBCs for transfusion purposes and the regulation of globin gene expression. These two themes are tightly interwoven, reflecting both the translational and fundamental aspects of erythropoiesis.

Generation of hematopoietic effector cells like red blood cells for transfusion purposes.

Classical cellular products like platelets and red blood cells are the most used cellular therapies worldwide. The research in my group has provided novel approaches and cellular systems to produce these classical products in vitro and donor independent, to allow optimal and individualized treatments. This has led to an in depth understanding of e.g. erythropoiesis and megakaryopoiesis, but also on general development of hematopoiesis placing our research firmly into the scientific community. The obtained knowledge is used not only to produce the classical cellular products but also to develop novel therapeutic products and diagnostic tools. RBCs with their unmatched biocompatibility and a safety record spanning over a century of clinical use, are now poised to become next-generation therapeutic vehicles. By genetically enhancing cultured RBCs (cRBCs) to carry specific cargo, we combine the proven safety of a well-characterized cell type with cutting-edge precision medicine, unlocking novel (immunological) applications that systemic therapies or other cell types cannot achieve. Our research lead upscaling efforts developing methodology to utilize turbulent 3D printed bioreactors (3l) to produce large amounts of cultured red blood cells, perform gene editing strategies to repair and/or amend the final product to the need of the patient. In additionan, also novel high throughput ways to detect allo-antibodies in plasma or to analyse erythrocyte morphologies that allow drug screening or patient monitoring were developed.
 

iPSC facility

In addition, I have setup an iPSC facility at Sanquin. In the facility we conduct reprogramming of somatic cells to iPSC lines using both integrative (lentiviral) and non-integrative approaches (Sendai, episomal). We have numerous control and patient lines that include for instance iPSC lines derived from patients with sickle cell disease, diamond blackfan anemia, grey platelet syndrome or specific leukemic translocations. Of note, specifically for DBAS we have a unique dataset of iPSC lines with various genetic origins. The iPSC facility conducts contract research and reprogramming on demand. With respect to their developmental stage, iPSC lines are comparable to embryonic stem cell and able to differentiate into all embryonic/fetal tissues depending on the cues given. Hematopoiesis and by extension erythropoiesis, occurs in three different independent spatially and temporally confined waves. In order of appearance these are the primitive wave followed by two definitive waves: the erythroid-myeloid progenitor (EMP) wave, and the Aorta-Gonad-Mesonephros (AGM)-wave. Adult hematopoiesis is a resultant of this last AGM wave. The last two waves are characterized by a process of trans-differentiation where specialized endothelial cells differentiate into hematopoietic stem and progenitor cells. Within my group we investigate the molecular cues that allow differentiation of iPSC into the different hematopoietic waves and lineages (including hematopoietic stem cells). We have models that recapitulate primitive and definitive wave hematopoiesis. The 3D protocols allow differentiation of iPSC to 3D hematopoietic organoids in turbulent (bioreactor) environments and yield all major hematopoietic lineages (erythroid, megakaryoid, myeloid, T-cell and hematopoietic progenitor cells) providing hematopoietic effector cell production starting points and cellular model systems for diseases.

We have collaborations with various companies and academic partners within Europe concerning our research and are embedded in many international and national consortia. For instance, we collaborate with PAN biotech with whom we have developed a completely novel culture media to grow hematopoietic cells, and we work together with the technical University and Delft and Gettinge to define the criteria to produce 3D printed stir-tank bioreactors that we are currently employing to upscale our red blood cell productions. Translational research is done in collaboration with the Laboratory for Cell Therapies at Sanquin.

Fetal and adult erythropoiesis, differences and similarities.

Human Cord blood and fetal liver erythropoiesis differs from adult erythropoiesis in several aspects. The regulation of developmentally different red blood cell population is of interest from several points of view.  One of our objectives is to develop and optimize a protocol for producing erythrocytes from iPSCs that closely resemble fetal red blood cells (RBCs) in structure and function. This will provide a safer alternative to adult RBCs for treating fetal anemia, reducing the risk of complications associated with current IUT and preterm transfusions. We therefor aim to characterize these different developmental waves of erythropoiesis and establish their viability for clinical application through rigorous functional testing and upscaling of production processes. In addition, these development waves of erythropoiesis are also defined by their different expression of globin genes: embryonic (zeta-epsilon), fetal (alpha-gamma) and adult (alpha-beta). The molecular pathways that control the so-called globin switch through replacing gamma-globin subunits with beta-globin subunits after birth is one of our key interests as it marks the clinical onset of beta-hemoglobinopathies where mutations in the beta-globin gene are causative, like sickle cell disease. Re-activation of gamma globin expression, and as a consequence fetal hemoglobin, at the expense of beta globin expression is known to be curative. 

We have generated several strategies (patented) to re-activate fetal hemoglobin expression. These strategies are currently evaluated and further developed into clinical applications. We use CRISPR  gene editing to force the re-expression of gamma-globin and fetal hemoglobin. We collaborate with several academic partners to evaluate different gene editing tools moving away from spyCas9, while also investing into in vivo systemic delivery of the gene editing machinery moving away from ex-vivo editing of hematopoietic stem cells followed by transplantation.

 

Key publications

Varga E, Brandsma E, Juarez-Garza BE, Ramlal RPE, Karrich JJ, Laurent A, Chavli A, Paskel R, Fu K, Flavell RA, von Lindern M, Amsen D, Klijn ME, van den Akker E. Adv Sci (Weinh). Large-Scale Production of Transfusion-Ready Red Blood Cells From Induced Pluripotent Stem Cells. 2025 Jul 12:e04725.

Anna-Karina Felder,  Sjoerd J.D. Tjalsma,  Han J.M.P. Verhagen, Rezin Majied, Marjon J.A.M. Verstegen,  Thijs C.J. Verheul, Rebecca Mohnani,  Richard Gremmen,  Peter H.L. Krijger,  Sjaak Philipsen,  Emile van den Akker*,  Wouter de Laat*. Reactivation of developmentally silenced globin genes through genomic deletions reveals that enhancer distance matters. Blood. 2025 Jun 2:blood.2024028128. 

Iacono G, Abay A, Murillo JSG, Aglialoro F, Yagci N, Varga E, Bijlsma T, Sohler J, Fu K, Reisz JA, Argabright A, D'Alessandro A, Svendsen AF, von Lindern M, van den Akker E. Differentiating erythroblasts adapt to mechanical stimulation by upregulation of cholesterol biosynthesis via S1P/SREBP-induced HMGCR expression. Sci Rep. 2024 Dec 4;14(1):30157.

Zhang H, Hansen M, Di Summa F, Von Lindern M, Gillemans N, Van IJcken WFJ, Svendsen AF, Philipsen S, Van der Reijden B, Varga E, Van den Akker E. LSD1/KDM1A and GFI1B repress endothelial fate and induce hematopoietic fate in induced pluripotent stem cell-derived hemogenic endothelium. Haematologica. 2024 Dec 1;109(12):3975-3988

Verhagen HJMP, Kuijk C, Rutgers L, Kokke AM, van der Meulen SA, van Mierlo G, Voermans C, van den Akker E. Optimized Guide RNA Selection Improves Streptococcus pyogenes Cas9 Gene Editing of Human Hematopoietic Stem and Progenitor Cells. CRISPR J. 2022 Oct;5(5):702-716

Gallego-Murillo JS, Iacono G, van der Wielen LAM, van den Akker E, von Lindern M, Wahl SA. Expansion and differentiation of ex vivo cultured erythroblasts in scalable stirred bioreactors. Biotechnol Bioeng. 2022 Nov;119(11):3096-3116

Heshusius S, Grech L, Gillemans N, Brouwer RWW, den Dekker XT, van Ijcken WFJ, Nota B, Felice AE, van Dijk TB, von Lindern M, Borg J, van den Akker E*, Philipsen S*. Epigenomic analysis of KLF1 haploinsufficiency in primary human erythroblasts. Sci Rep. 2022 Jan 10;12(1):336.

Heshusius S, Heideveld E, von Lindern M, van den Akker E. CD14+ monocytes repress gamma globin expression at early stages of erythropoiesis. Sci Rep. 2021 Jan 15;11(1):1507

Hansen M, Varga E, Aarts C, Wust T, Kuijpers T, von Lindern M, van den Akker E. Efficient production of erythroid, megakaryocytic and myeloid cells, using single cell-derived iPSC colony differentiation. Stem Cell Res. 2018 May;29:232-244.

Heideveld E, Masiello F, Marra M, Esteghamat F, Yağcı N, von Lindern M, Migliaccio AR, van den Akker E. CD14+ cells from peripheral blood positively regulate hematopoietic stem and progenitor cell survival resulting in increased erythroid yield. Haematologica. 2015 Nov;100(11):1396-406.  Epub 2015 Aug 20.

All papers in pubmed and Google scholar

 

Funding

  • Dutch Medical Research Council
  • EU-Horizon
  • TKI Health Holland
  • Landsteiner Foundation for Blood Transfusion Research
  • Sanquin Research Fund
  • Dutch Cancer Society
  • EU-Cost-action

Other information

 

Joaquín Delgadillo, Erja Kerkelä, Allison Waters, Emile van den Akker, Chantal Lechanteur, Etienne Baudoux, Nicola Gardiner, John De Vos, Joaquim Vives. A management model in blood, tissue and cell establishments to ensure rapid and sustainable patient access to advanced therapy medicinal products in Europe Cytotherapy. 2023 Dec;25(12):1259-1264.

Hansen M, von Lindern M, van den Akker E, Varga E. Human-induced pluripotent stem cell-derived blood products: state of the art and future directions.FEBS Lett. 2019 Dec;593(23):3288-3303.

Heideveld E, van den Akker E. Digesting the role of bone marrow macrophages on hematopoiesis. Immunobiology. 2017 Jun;222(6):814-822. doi: 10.1016/j.imbio.2016.11.007.

Ovchynnikova E, Aglialoro F, von Lindern M, van den Akker E. The Shape Shifting Story of Reticulocyte Maturation. Front Physiol. 2018 Jul 11;9:829.

Maken van kweekbloed in focus NPO series: https://ntr.nl/Focus/287/detail/Kweekbloed/VPWON_1344850

Consortia websites

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Ancillary positions

  • 2014-currently   Founding Member of the Dutch iPSC workgroup.
  • 2019-currently   Assessor and examiner at the UvA (University of Amsterdam).
  • 2019-currently  Track Organizer of UvA master course: ”making and shaping blood”. 
  • 2023-currently   Member of the Dutch Hematology Congress organizational committee.
  • 2023-currently  Board member of the Dutch society of stem cell research 
Group members

Emile (E.) van den Akker, PhD

Group leader
Photo group leader Emile van den Akker

Vera (V.E.) Adriaanssen

Technician
Profiel vrouw

Oyishee (O.) Ahmad

PhD-student
Oyishee Ahmad

Youmna (Y.) Al Halabi

PhD-student
Profiel vrouw

Marie-José (M.J.A.G.) Claessen, MD

Guest
Marie-José_Claessen

Chantal (C.C.) Clark, PhD

Postdoc
Profiel vrouw

Ariel (A.) Coli

Guest
PhD-student
Profiel vrouw

Richard Maximilian (R.M.) Essink

Intern
Profiel man

Kerly (K.) Fu

Technician
Profiel vrouw

Giulia (G.) Iacono

Guest
Giulia_Iacono

Lucas (L.J.) Kuijpers, PhD

Postdoc
Profiel man

Máté (M.M.) Majtényi

PhD-student
Profiel man

Victoria (V.) Pozo Garcia, MD PhD

Postdoc
Victoria Pozo Garcia

Renuka (R.P.E.) Ramlal

Technician
Profiel vrouw

Loane (L.M.) Schertzer

PhD-student
Loane Schertzer

Teun (A.P.) Slijkerman

PhD-student
Profiel man

Marien (M.) Van der Stel

Intern
Profiel man

Nadine (N.D.) Van Kleef

Technician
Profiel vrouw

Raven (R.L.R.) Van Waijjen

Intern
Profiel man

Eszter (E.) Varga

Postdoc
Profiel vrouw

Han (H.J.M.P.) Verhagen, PhD

Postdoc
Profiel man

Nurcan (N.) Yagci

Senior technician
Profiel vrouw

Huan (H.) Zhang

PhD-student
Huan_Zhang

Maud (M.) Zwolsman

PhD-student
Profiel man